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Mol Path 54:8-16 doi:10.1136/mp.54.1.8

Microarrays under the microscope

Table 1

What to spot: options available

Source of clone Spotted DNA Region of interest Primer for cDNA synthesis
SSH, suppression subtractive hybridisation.
Publicly available clones, such as those from the IMAGE consortium Entire clone or entire plasmids Region unknown/unspecified Random hexamers
In house derived—for example, by SSH PCR product from plasmid Specific region Specific primers
Custom made/purchased libraries Expressed sequence tags 3′ end of gene Poly(T)

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